Can I cite UniProt?
https://www.uniprot.org/uniparc/UPI00000002E4. Remarks: A UniProtKB accession number (AC) is a stable identifier and therefore allows unambiguous citation of a UniProtKB entry. It is recommended to always link to a UniProtKB entry by its primary accession number.
What is the UniProt database?
The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc).
Is UniProt and Swiss-Prot same?
UniProt provides a comprehensive, high-quality and freely accessible resource of protein sequence and functional information. UniProtKB/Swiss-Prot is a high quality manually annotated (reviewed) and non- redundant protein sequence database, which brings together experimental results and computed features.
What type of knowledge database is UniProt?
protein sequence database
UniProtKB/Swiss-Prot (reviewed) is a high quality manually annotated and non-redundant protein sequence database, which brings together experimental results, computed features and scientific conclusions.
How do I cite NCBI services and databases?
To cite the entire NCBI site, use this format:
- National Center for Biotechnology Information (NCBI)[Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1988] – [cited 2017 Apr 06].
- Gene [Internet].
- Nucleotide [Internet].
What is TrEMBL?
TrEMBL, (Translated EMBL) is a very large protein database in SwissProt format generated by computer translation of the genetic information from the EMBL Nucleotide Sequence Database database. In contrast to SwissProt which contains only proteins actually found in the wild, and PIR which is entirely unchecked.
What is difference between Fasta and Blast?
The main difference between BLAST and FASTA is that BLAST is mostly involved in finding of ungapped, locally optimal sequence alignments whereas FASTA is involved in finding similarities between less similar sequences.
Is UniProt a primary database?
UniProt is a freely accessible database of protein sequence and functional information, many entries being derived from genome sequencing projects….UniProt.
| Content | |
|---|---|
| Primary citation | UniProt Consortium |
| Access | |
| Data format | Custom flat file, FASTA, GFF, RDF, XML. |
| Website | www.uniprot.org www.uniprot.org/news/ |
Is Swiss Prot a primary database?
SWISS PROT is a protein sequence database. Annotations in the database provide all the information regarding the structure and function of a particular protein along with its functions and modifications if any. The data is all primary and easily accessible. It is thus a primary database.
Is Uniprot a primary database?
Is PDB a primary database?
PDB is a primary protein structure database. It is a crystallographic database for the three-dimensional structure of large biological molecules, such as proteins. The database holds data derived from mainly three sources: Structure determined by X-ray crystallography, NMR experiments, and molecular modeling.
Where can I get database identifiers for UniProt?
Alternatively, you can download the data underlying our database identifier service mapping service from https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/ Related terms: programmatic access, program, script, wget, curl, web services, API, uploadlists
What is the purpose of the UniProt KnowledgeBase?
The UniProt Knowledgebase (UniProtKB) aims to act as a central hub of protein knowledge by providing a unified view of protein sequence and functional information.
Where can I find the UniProtKB accession number?
When browsing through different UniProt proteins, you can use the ‘basket’ to save them, so that you can back to find or analyse them later. More… This subsection of the ‘Entry information’ section provides one or more accession number (s). These are stable identifiers and should be used to cite UniProtKB entries.
Which is automatically imported section of UniProtKB?
The section of UniProtKB which has been automatically imported. The non canonical isoforms of UniProtKB Swiss-Prot (reviewed) entries. The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records.